If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 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'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 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'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ), 'gf_id' => 'HOM05D000671', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000671' ), 'data_identifier' => 'HOM05D000671', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000671', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41930' => 'bna', 'A03p02460' => 'bna', 'A03p37000' => 'bna', 'A06p09130' => 'bna', 'A07p27910' => 'bna', 'A07p43000' => 'bna', 'A08p28780' => 'bna', 'A08p32800' => 'bna', 'A09p24760' => 'bna', 'A10p30550' => 'bna', 'A10p31980' => 'bna', 'Aa31LG11G6830' => 'aar', 'Aa31LG1G21180' => 'aar', 'Aa31LG1G2130' => 'aar', 'Aa31LG3G2870' => 'aar', 'Aa31LG3G4670' => 'aar', 'Aa31LG4G7720' => 'aar', 'Aa31LG7G5830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.66' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2650' => 'aag', 'Actinidia02616' => 'ach', 'Actinidia06598' => 'ach', 'Actinidia13791' => 'ach', 'Actinidia13911' => 'ach', 'Actinidia17670' => 'ach', 'Actinidia23074' => 'ach', 'Actinidia29668' => 'ach', 'Actinidia38126' => 'ach', 'Actinidia38129' => 'ach', 'Actinidia38134' => 'ach', 'Ah.04g151460' => 'amhyb', 'Ah.10g036720' => 'amhyb', 'Ah.12g053470' => 'amhyb', 'Ah.12g057960' => 'amhyb', 'Ah.14g082680' => 'amhyb', 'Ah.16g103020' => 'amhyb', 'AL142U10020' => 'aly', 'AL1G23850' => 'aly', 'AL1G35070' => 'aly', 'AL2G37820' => 'aly', 'AL3G21610' => 'aly', 'AL3G22830' => 'aly', 'AL6G13780' => 'aly', 'AL6G15720' => 'aly', 'AL7G48860' => 'aly', 'Aqoxy1G00298' => 'aox', 'Aqoxy1G00742' => 'aox', 'Aqoxy6G00204' => 'aox', 'Aqoxy7G00565' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UZF17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VJ7W8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1MWR3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q4I06' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3A58UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51DSAI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5P0VXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QD1DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDH7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7TIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW27AX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6I93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1QHHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDE0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VWK7AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB2C52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y89M89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW08C0' => 'arhy', 'AT1G12500' => 'ath', 'AT1G21870' => 'ath', 'AT1G77610' => 'ath', 'AT3G10290' => 'ath', 'AT3G11320' => 'ath', 'AT5G04160' => 'ath', 'AT5G05820' => 'ath', 'ATR0721G091' => 'atr', 'ATR0757G123' => 'atr', 'ATR0810G243' => 'atr', 'ATR1134G100' => 'atr', 'ATR1159G088' => 'atr', 'Atru.chr1.1153' => 'acertr', 'Atru.chr12.287' => 'acertr', 'Atru.chr12.326' => 'acertr', 'Atru.chr13.1447' => 'acertr', 'Atru.chr13.1471' => 'acertr', 'Atru.chr8.2132' => 'acertr', 'Atru.chr9.1483' => 'acertr', 'AUR62001708' => 'cqu', 'AUR62010543' => 'cqu', 'AUR62012191' => 'cqu', 'AUR62017352' => 'cqu', 'AUR62019045' => 'cqu', 'AUR62020073' => 'cqu', 'AUR62022825' => 'cqu', 'AUR62024503' => 'cqu', 'AUR62026089' => 'cqu', 'AUR62027885' => 'cqu', 'BcaB01g05772' => 'bca', 'BcaB01g05886' => 'bca', 'BcaB01g05965' => 'bca', 'BcaB02g07114' => 'bca', 'BcaB03g11882' => 'bca', 'BcaB03g13184' => 'bca', 'BcaB03g15941' => 'bca', 'BcaB04g19400' => 'bca', 'BcaB04g21219' => 'bca', 'BcaB06g25633' => 'bca', 'BcaC01g04133' => 'bca', 'BcaC05g25184' => 'bca', 'BcaC05g29479' => 'bca', 'BcaC06g32118' => 'bca', 'BcaC06g32290' => 'bca', 'BcaC07g39125' => 'bca', 'BcaC07g42529' => 'bca', 'BcaC08g45158' => 'bca', 'BcaC08g47601' => 'bca', 'BcaC09g48104' => 'bca', 'BcaC09g48166' => 'bca', 'BcaNung07089' => 'bca', 'BcaNung07327' => 'bca', 'BolC1t05322H' => 'bol', 'BolC1t05409H' => 'bol', 'BolC3t12744H' => 'bol', 'BolC3t12834H' => 'bol', 'BolC3t16742H' => 'bol', 'BolC5t29813H' => 'bol', 'BolC5t34344H' => 'bol', 'BolC5t34442H' => 'bol', 'BolC6t37847H' => 'bol', 'BolC6t37948H' => 'bol', 'BolC6t38255H' => 'bol', 'BolC6t40182H' => 'bol', 'BolC7t40574H' => 'bol', 'BolC8t49174H' => 'bol', 'BolC8t49754H' => 'bol', 'BolC9t59865H' => 'bol', 'BolC9t60009H' => 'bol', 'BraA01t02746Z' => 'bra', 'BraA01t04262Z' => 'bra', 'BraA03t09531Z' => 'bra', 'BraA03t09607Z' => 'bra', 'BraA03t12862Z' => 'bra', 'BraA05t22594Z' => 'bra', 'BraA06t24098Z' => 'bra', 'BraA07t30439Z' => 'bra', 'BraA07t31821Z' => 'bra', 'BraA08t34807Z' => 'bra', 'BraA08t35203Z' => 'bra', 'BraA10t45096Z' => 'bra', 'BraA10t45242Z' => 'bra', 'C03p01900' => 'bna', 'C03p02790' => 'bna', 'C03p44790' => 'bna', 'C03p53170' => 'bna', 'C05p10720' => 'bna', 'C05p57870' => 'bna', 'C06p27820' => 'bna', 'C06p31000' => 'bna', 'C06p31160' => 'bna', 'C06p51640' => 'bna', 'C08p15460' => 'bna', 'C08p21140' => 'bna', 'C09p71010' => 'bna', 'C09p72700' => 'bna', 'CAN.G1040.13' => 'can', 'CAN.G1665.9' => 'can', 'CAN.G201.34' => 'can', 'CAN.G503.14' => 'can', 'CAN.G630.26' => 'can', 'CAN.G641.28' => 'can', 'CAN.G676.10' => 'can', 'CAN.G86.8' => 'can', 'CANSAT21G1231' => 'cansat', 'CANSAT25G1020' => 'cansat', 'CANSAT56G3150' => 'cansat', 'CANSAT56G3206' => 'cansat', 'CANSAT80G0224' => 'cansat', 'CARHR012790' => 'chi', 'CARHR022220' => 'chi', 'CARHR043470' => 'chi', 'CARHR071120' => 'chi', 'CARHR084760' => 'chi', 'CARHR085860' => 'chi', 'CARHR184790' => 'chi', 'CARHR207430' => 'chi', 'CARHR207440' => 'chi', 'CARHR209100' => 'chi', 'CARHR209110' => 'chi', 'Carub.0001s1220' => 'cru', 'Carub.0001s2134' => 'cru', 'Carub.0002s2450' => 'cru', 'Carub.0003s0946' => 'cru', 'Carub.0003s1063' => 'cru', 'Carub.0006s0311' => 'cru', 'Carub.0006s0472' => 'cru', 'Ca_05924_v3' => 'car', 'Ca_12293_v3' => 'car', 'Ca_12614_v3' => 'car', 'Ca_14887_v3' => 'car', 'Ca_15189_v3' => 'car', 'Ca_17138_v3' => 'car', 'Ca_17746_v3' => 'car', 'CBR_g10803' => 'cbr', 'CBR_g20173' => 'cbr', 'CBR_g48671' => 'cbr', 'Cc00_g04260' => 'ccan', 'Cc02_g07020' => 'ccan', 'Cc06_g01780' => 'ccan', 'Cc06_g17940' => 'ccan', 'Cc08_g13580' => 'ccan', 'CDE02G1244' => 'cde', 'CDE02G1808' => 'cde', 'CDE02G2926' => 'cde', 'CDE04G2282' => 'cde', 'CDE04G2411' => 'cde', 'CDE06G0336' => 'cde', 'CDE06G1519' => 'cde', 'CDE07G1494' => 'cde', 'CDE07G1939' => 'cde', 'CDE08G1540' => 'cde', 'Cfa001375' => 'cfa', 'Cfa012050' => 'cfa', 'Cfa016010' => 'cfa', 'Cfa016784' => 'cfa', 'Cfa017265' => 'cfa', 'Ciclev10001739m.g' => 'ccl', 'Ciclev10003920m.g' => 'ccl', 'Ciclev10005494m.g' => 'ccl', 'Ciclev10006563m.g' => 'ccl', 'Ciclev10010290m.g' => 'ccl', 'Ciclev10020804m.g' => 'ccl', 'Ciclev10029901m.g' => 'ccl', 'Ciclev10032214m.g' => 'ccl', 'Ciclev10033581m.g' => 'ccl', 'CiPaw.01G294800' => 'cil', 'CiPaw.02G189200' => 'cil', 'CiPaw.05G222600' => 'cil', 'CiPaw.06G030400' => 'cil', 'CiPaw.10G035200' => 'cil', 'CiPaw.11G144400' => 'cil', 'CiPaw.12G102300' => 'cil', 'ClCG00G000110' => 'cla', 'ClCG01G003430' => 'cla', 'ClCG07G003860' => 'cla', 'ClCG10G003360' => 'cla', 'ClCG10G015650' => 'cla', 'ClCG11G006390' => 'cla', 'ClCG11G015700' => 'cla', 'COL.COLO4_03677' => 'col', 'COL.COLO4_21333' => 'col', 'COL.COLO4_23826' => 'col', 'COL.COLO4_25612' => 'col', 'COL.COLO4_35938' => 'col', 'Cpa.g.sc112.82' => 'cpa', 'Cpa.g.sc1210.3' => 'cpa', 'Cpa.g.sc182.11' => 'cpa', 'Cpa.g.sc19.229' => 'cpa', 'Cpa.g.sc29.50' => 'cpa', 'Cpa.g.sc36.58' => 'cpa', 'Cre03.g184850' => 'cre', 'Cre04.g227450' => 'cre', 'Cre12.g501000' => 'cre', 'Cre15.g642976' => 'cre', 'Cre15.g643385' => 'cre', 'CsaV3_3G003390' => 'csa', 'CsaV3_3G040770' => 'csa', 'CsaV3_4G028310' => 'csa', 'CsaV3_5G003530' => 'csa', 'CsaV3_5G008800' => 'csa', 'CsaV3_6G001610' => 'csa', 'CSS0005856' => 'camsi', 'CSS0011051' => 'camsi', 'CSS0011846' => 'camsi', 'CSS0011937' => 'camsi', 'CSS0015689' => 'camsi', 'CSS0019892' => 'camsi', 'CSS0020763' => 'camsi', 'CSS0035497' => 'camsi', 'CSS0036360' => 'camsi', 'CSS0037623' => 'camsi', 'CSS0040363' => 'camsi', 'CSS0040543' => 'camsi', 'CSS0041496' => 'camsi', 'CSS0047904' => 'camsi', 'DCAR_000883' => 'dca', 'DCAR_011618' => 'dca', 'DCAR_011776' => 'dca', 'DCAR_013611' => 'dca', 'DCAR_014090' => 'dca', 'DCAR_015462' => 'dca', 'DCAR_017423' => 'dca', 'DCAR_018736' => 'dca', 'DCAR_020509' => 'dca', 'DCAR_027558' => 'dca', 'DCAR_027559' => 'dca', 'Dinv07227' => 'din', 'Dinv07457' => 'din', 'Dinv20940' => 'din', 'Dinv21004' => 'din', 'Dinv27322' => 'din', 'Dinv33150' => 'din', 'Dinv34435' => 'din', 'Dinv35519' => 'din', 'Dinv37092' => 'din', 'Dinv37726' => 'din', 'Dinv39049' => 'din', 'Dinv39654' => 'din', 'Duzib041G0671' => 'dzi', 'Duzib068G1194' => 'dzi', 'Duzib084G1163' => 'dzi', 'Duzib093G0397' => 'dzi', 'Duzib093G1798' => 'dzi', 'Duzib106G1838' => 'dzi', 'Duzib106G1889' => 'dzi', 'Duzib114G0086' => 'dzi', 'Duzib116G0465' => 'dzi', 'Duzib128G0349' => 'dzi', 'Duzib128G1712' => 'dzi', 'Duzib128G1734' => 'dzi', 'Duzib170G0737' => 'dzi', 'Duzib205G1776' => 'dzi', 'ECA233G3456' => 'eca', 'ECA233G4450' => 'eca', 'ECA238G2372' => 'eca', 'ECA246G4462' => 'eca', 'ECA247G0700' => 'eca', 'ECA248G1012' => 'eca', 'EL10Ac1g01054' => 'bvu', 'EL10Ac2g04770' => 'bvu', 'EL10Ac3g07133' => 'bvu', 'EL10Ac5g12665' => 'bvu', 'EL10Ac7g16102' => 'bvu', 'Eucgr.D01959' => 'egr', 'Eucgr.F03784' => 'egr', 'Eucgr.G03021' => 'egr', 'Eucgr.K02017' => 'egr', 'FAN01G1236' => 'fan', 'FAN02G1195' => 'fan', 'FAN02G2561' => 'fan', 'FAN02G3317' => 'fan', 'FAN03G0130' => 'fan', 'FAN04G0125' => 'fan', 'FAN05G1950' => 'fan', 'FAN05G2760' => 'fan', 'FAN05G4444' => 'fan', 'FAN06G0437' => 'fan', 'FAN06G0576' => 'fan', 'FAN08G0871' => 'fan', 'FAN09G0767' => 'fan', 'FAN10G2840' => 'fan', 'FAN11G1185' => 'fan', 'FAN13G1748' => 'fan', 'FAN14G0805' => 'fan', 'FAN14G1197' => 'fan', 'FAN14G3203' => 'fan', 'FAN15G0640' => 'fan', 'FAN15G2179' => 'fan', 'FAN16G1135' => 'fan', 'FAN18G1454' => 'fan', 'FAN20G0237' => 'fan', 'FAN21G3207' => 'fan', 'FAN24G1882' => 'fan', 'FAN25G1559' => 'fan', 'FAN27G3513' => 'fan', 'FvH4_2g26800' => 'fve', 'FvH4_3g37700' => 'fve', 'FvH4_5g01050' => 'fve', 'FvH4_6g12230' => 'fve', 'FvH4_6g24460' => 'fve', 'FvH4_7g23830' => 'fve', 'Glyma.01G110300' => 'gma', 'Glyma.02G253600' => 'gma', 'Glyma.03G076000' => 'gma', 'Glyma.03G134100' => 'gma', 'Glyma.04G250000' => 'gma', 'Glyma.05G054700' => 'gma', 'Glyma.06G112800' => 'gma', 'Glyma.08G335000' => 'gma', 'Glyma.11G226200' => 'gma', 'Glyma.13G080400' => 'gma', 'Glyma.14G062800' => 'gma', 'Glyma.14G148900' => 'gma', 'Glyma.17G137200' => 'gma', 'Glyma.18G031100' => 'gma', 'Glyma.18G067900' => 'gma', 'Glyma.19G136300' => 'gma', 'Gohir.A01G130700' => 'ghi', 'Gohir.A01G224800' => 'ghi', 'Gohir.A02G073200' => 'ghi', 'Gohir.A03G012800' => 'ghi', 'Gohir.A05G234700' => 'ghi', 'Gohir.A05G303500' => 'ghi', 'Gohir.A06G165000' => 'ghi', 'Gohir.A08G001900' => 'ghi', 'Gohir.A08G175400' => 'ghi', 'Gohir.A09G121400' => 'ghi', 'Gohir.A10G228600' => 'ghi', 'Gohir.A12G223100' => 'ghi', 'Gohir.A13G016800' => 'ghi', 'Gohir.D01G119800' => 'ghi', 'Gohir.D01G214400' => 'ghi', 'Gohir.D02G080500' => 'ghi', 'Gohir.D03G156700' => 'ghi', 'Gohir.D04G066200' => 'ghi', 'Gohir.D05G237000' => 'ghi', 'Gohir.D05G302600' => 'ghi', 'Gohir.D06G170500' => 'ghi', 'Gohir.D08G012600' => 'ghi', 'Gohir.D08G194100' => 'ghi', 'Gohir.D09G117500' => 'ghi', 'Gohir.D10G242600' => 'ghi', 'Gohir.D12G225700' => 'ghi', 'Gohir.D13G017900' => 'ghi', 'Gorai.002G055300' => 'gra', 'Gorai.002G146200' => 'gra', 'Gorai.002G260500' => 'gra', 'Gorai.003G164600' => 'gra', 'Gorai.004G006600' => 'gra', 'Gorai.004G204500' => 'gra', 'Gorai.005G089900' => 'gra', 'Gorai.006G135900' => 'gra', 'Gorai.008G241700' => 'gra', 'Gorai.009G245400' => 'gra', 'Gorai.009G321700' => 'gra', 'Gorai.010G199400' => 'gra', 'Gorai.011G279000' => 'gra', 'Gorai.012G074900' => 'gra', 'Gorai.013G019900' => 'gra', 'GSVIVG01008878001' => 'vvi', 'GSVIVG01016383001' => 'vvi', 'GSVIVG01019914001' => 'vvi', 'GSVIVG01024817001' => 'vvi', 'GSVIVG01033237001' => 'vvi', 'GSVIVG01034023001' => 'vvi', 'HanXRQChr02g0047731' => 'han', 'HanXRQChr04g0125071' => 'han', 'HanXRQChr05g0150541' => 'han', 'HanXRQChr06g0179301' => 'han', 'HanXRQChr07g0202271' => 'han', 'HanXRQChr08g0222191' => 'han', 'HanXRQChr12g0369361' => 'han', 'HanXRQChr13g0406431' => 'han', 'HanXRQChr15g0464101' => 'han', 'HanXRQChr17g0561481' => 'han', 'Haze_00446' => 'cav', 'Haze_09016' => 'cav', 'Haze_17171' => 'cav', 'Haze_17172' => 'cav', 'Haze_19803' => 'cav', 'Haze_19807' => 'cav', 'Haze_20936' => 'cav', 'Hma1.2p1_0010F.1_g006680' => 'hma', 'Hma1.2p1_0026F.1_g016900' => 'hma', 'Hma1.2p1_0138F.1_g062910' => 'hma', 'Hma1.2p1_0186F.1_g081750' => 'hma', 'Hma1.2p1_0593F.1_g185775' => 'hma', 'Hma1.2p1_0593F.1_g185780' => 'hma', 'Hma1.2p1_0763F.1_g214530' => 'hma', 'Hma1.2p1_1613F.1_g293640' => 'hma', 'Hma1.2p1_1997F.1_g310453' => 'hma', 'Hma1.2p1_1997F.1_g310456' => 'hma', 'HPP92_001035' => 'vpl', 'HPP92_014942' => 'vpl', 'HPP92_014986' => 'vpl', 'HPP92_015573' => 'vpl', 'HPP92_017938' => 'vpl', 'HPP92_025162' => 'vpl', 'Hund04900' => 'sun', 'Hund15994' => 'sun', 'Hund16857' => 'sun', 'Hund19136' => 'sun', 'Hund27021' => 'sun', 'Lalb_Chr01g0017401' => 'lal', 'Lalb_Chr04g0253421' => 'lal', 'Lalb_Chr05g0225221' => 'lal', 'Lalb_Chr08g0241461' => 'lal', 'Lalb_Chr08g0241471' => 'lal', 'Lalb_Chr10g0101761' => 'lal', 'Lalb_Chr10g0104961' => 'lal', 'Lalb_Chr11g0065871' => 'lal', 'Lalb_Chr15g0084361' => 'lal', 'Lalb_Chr17g0343771' => 'lal', 'Lalb_Chr17g0346491' => 'lal', 'Lalb_Chr18g0052791' => 'lal', 'Lalb_Chr20g0110651' => 'lal', 'Lalb_Chr20g0116681' => 'lal', 'Lalb_Chr20g0116721' => 'lal', 'Lalb_Chr25g0287281' => 'lal', 'Lj1A1126G55' => 'lonja', 'Lj1A1127G48' => 'lonja', 'Lj1C949T3' => 'lonja', 'Lj1g0008717' => 'lja', 'Lj1g0021001' => 'lja', 'Lj1g0021857' => 'lja', 'Lj2A203T55' => 'lonja', 'Lj2A387T45' => 'lonja', 'Lj2A82T22' => 'lonja', 'Lj2g0000783' => 'lja', 'Lj3A957T38' => 'lonja', 'Lj3g0009627' => 'lja', 'Lj4A623G14' => 'lonja', 'Lj4g0002223' => 'lja', 'Lj6g0019808' => 'lja', 'Lj6g0024097' => 'lja', 'Lj7C339G13' => 'lonja', 'Lj8A73G47' => 'lonja', 'LjContig00357g0012893' => 'lja', 'Lsat_1_v5_gn_1_35920' => 'lsa', 'Lsat_1_v5_gn_2_120380' => 'lsa', 'Lsat_1_v5_gn_3_4660' => 'lsa', 'Lsat_1_v5_gn_3_4780' => 'lsa', 'Lsat_1_v5_gn_5_155641' => 'lsa', 'Lsat_1_v5_gn_5_89840' => 'lsa', 'Lsat_1_v5_gn_6_10280' => 'lsa', 'Lsat_1_v5_gn_6_109681' => 'lsa', 'Lsat_1_v5_gn_8_12601' => 'lsa', 'Lsat_1_v5_gn_8_82161' => 'lsa', 'Lsat_1_v5_gn_9_30961' => 'lsa', 'Lsat_1_v5_gn_9_31521' => 'lsa', 'Manes.01G070900' => 'mes', 'Manes.01G165601' => 'mes', 'Manes.02G029475' => 'mes', 'Manes.02G162600' => 'mes', 'Manes.07G124100' => 'mes', 'Manes.08G052500' => 'mes', 'Manes.10G019400' => 'mes', 'Manes.18G076500' => 'mes', 'Mapoly0004s0301' => 'mpo', 'MBI04_g46546_MAGBIO' => 'mbi', 'MBI05_g36583_MAGBIO' => 'mbi', 'MBI08_g29080_MAGBIO' => 'mbi', 'MBI11_g04756_MAGBIO' => 'mbi', 'MBI11_g04757_MAGBIO' => 'mbi', 'MBI12_g43390_MAGBIO' => 'mbi', 'MBI13_g15310_MAGBIO' => 'mbi', 'MBI14_g32810_MAGBIO' => 'mbi', 'MBI15_g00937_MAGBIO' => 'mbi', 'MBI18_g46683_MAGBIO' => 'mbi', 'MCO07G625' => 'mco', 'MCO13G573' => 'mco', 'MCO17G058' => 'mco', 'MD01G1145600' => 'mdo', 'MD03G1078400' => 'mdo', 'MD04G1075500' => 'mdo', 'MD04G1144900' => 'mdo', 'MD04G1145000' => 'mdo', 'MD06G1068400' => 'mdo', 'MD07G1212700' => 'mdo', 'MD08G1164800' => 'mdo', 'MD12G1040300' => 'mdo', 'MD12G1081800' => 'mdo', 'MD12G1158900' => 'mdo', 'MD14G1077100' => 'mdo', 'MD15G1350800' => 'mdo', 'MD15G1353700' => 'mdo', 'Medtr1g030320' => 'mtr', 'Medtr3g069990' => 'mtr', 'Medtr3g070000' => 'mtr', 'Medtr3g072380' => 'mtr', 'Medtr3g462070' => 'mtr', 'Medtr4g018760' => 'mtr', 'Medtr4g101860' => 'mtr', 'Medtr5g081710' => 'mtr', 'Medtr8g090130' => 'mtr', 'MELO3C005600.2' => 'cme', 'MELO3C008272.2' => 'cme', 'MELO3C009810.2' => 'cme', 'MELO3C010474.2' => 'cme', 'MELO3C014005.2' => 'cme', 'MELO3C025141.2' => 'cme', 'Migut.A00878' => 'egut', 'Migut.C01136' => 'egut', 'Migut.E01020' => 'egut', 'Migut.F00711' => 'egut', 'Migut.F01440' => 'egut', 'Migut.J01729' => 'egut', 'Migut.N03285' => 'egut', 'Migut.O00410' => 'egut', 'MSTRG.1449' => 'ama', 'MSTRG.233' => 'ama', 'MSTRG.25386' => 'ama', 'MSTRG.26132' => 'ama', 'MSTRG.27353' => 'ama', 'MSTRG.6411' => 'ama', 'MSTRG.8306' => 'ama', 'MSTRG.8977' => 'ama', 'Nitab4.5_0000082g0270' => 'nta', 'Nitab4.5_0000153g0050' => 'nta', 'Nitab4.5_0000278g0140' => 'nta', 'Nitab4.5_0000562g0060' => 'nta', 'Nitab4.5_0000633g0200' => 'nta', 'Nitab4.5_0000677g0230' => 'nta', 'Nitab4.5_0000826g0190' => 'nta', 'Nitab4.5_0001018g0130' => 'nta', 'Nitab4.5_0001018g0140' => 'nta', 'Nitab4.5_0001618g0250' => 'nta', 'Nitab4.5_0001803g0060' => 'nta', 'Nitab4.5_0004338g0010' => 'nta', 'Nitab4.5_0004882g0020' => 'nta', 'Nitab4.5_0005167g0070' => 'nta', 'Nitab4.5_0005850g0030' => 'nta', 'Nitab4.5_0008712g0030' => 'nta', 'Nitab4.5_0009908g0010' => 'nta', 'Nitab4.5_0010186g0010' => 'nta', 'Nitab4.5_0012716g0010' => 'nta', 'Nn1g01175' => 'nnu', 'Nn1g08751' => 'nnu', 'Nn2g11339' => 'nnu', 'Nn2g13582' => 'nnu', 'Nn2g14876' => 'nnu', 'Nn2g15139' => 'nnu', 'Nn4g26445' => 'nnu', 'Nn5g28256' => 'nnu', 'Nn8g40765' => 'nnu', 'Oeu006915.1' => 'oeu', 'Oeu017293.2' => 'oeu', 'Oeu026149.1' => 'oeu', 'Oeu032672.1' => 'oeu', 'Oeu033019.1' => 'oeu', 'Oeu038496.1' => 'oeu', 'Oeu038922.1' => 'oeu', 'Oeu038993.1' => 'oeu', 'Oeu040423.1' => 'oeu', 'Oeu044909.1' => 'oeu', 'Oeu050915.3' => 'oeu', 'Oeu055825.1' => 'oeu', 'Oeu056811.1' => 'oeu', 'Oeu059749.1' => 'oeu', 'Os03g0286300' => 'osa', 'Os04g0692000' => 'osa', 'Os05g0121900' => 'osa', 'Os08g0104900' => 'osa', 'Peaxi162Scf00002g03316' => 'pax', 'Peaxi162Scf00051g00087' => 'pax', 'Peaxi162Scf00069g00106' => 'pax', 'Peaxi162Scf00130g00724' => 'pax', 'Peaxi162Scf00401g00020' => 'pax', 'Peaxi162Scf00620g00026' => 'pax', 'Peaxi162Scf00957g00017' => 'pax', 'PGR031G0621' => 'pgr', 'PGR042G3863' => 'pgr', 'PGR044G1018' => 'pgr', 'PGR142G4419' => 'pgr', 'PGSC0003DMG400003916' => 'stu', 'PGSC0003DMG400008169' => 'stu', 'PGSC0003DMG400017572' => 'stu', 'PGSC0003DMG400029844' => 'stu', 'PGSC0003DMG401027186' => 'stu', 'PGSC0003DMG402012710' => 'stu', 'Phvul.001G129500' => 'pvu', 'Phvul.001G239500' => 'pvu', 'Phvul.003G216800' => 'pvu', 'Phvul.006G137900' => 'pvu', 'Phvul.008G227200' => 'pvu', 'Phvul.009G124700' => 'pvu', 'Phvul.010G007700' => 'pvu', 'Potri.001G114100' => 'ptr', 'Potri.001G247600' => 'ptr', 'Potri.001G289900' => 'ptr', 'Potri.002G084500' => 'ptr', 'Potri.003G118000' => 'ptr', 'Potri.005G177200' => 'ptr', 'Potri.006G046600' => 'ptr', 'Potri.008G063400' => 'ptr', 'Potri.009G040800' => 'ptr', 'Potri.010G194100' => 'ptr', 'Potri.016G043200' => 'ptr', 'Pp3c11_18310' => 'ppa', 'Pp3c26_10920' => 'ppa', 'Pp3c4_24270' => 'ppa', 'Pp3c7_5410' => 'ppa', 'PRCOL_00000257' => 'pco', 'PRCOL_00006104' => 'pco', 'PRCOL_00006543' => 'pco', 'Prupe.1G499700' => 'ppe', 'Prupe.2G244900' => 'ppe', 'Prupe.5G084500' => 'ppe', 'Prupe.6G063400' => 'ppe', 'Prupe.6G269300' => 'ppe', 'Prupe.7G054100' => 'ppe', 'Psat2g036080' => 'psa', 'Psat4g069520' => 'psa', 'Psat5g127560' => 'psa', 'Psat5g132080' => 'psa', 'Psat5g162760' => 'psa', 'Psat6g040960' => 'psa', 'Psat7g055800' => 'psa', 'Psat7g242920' => 'psa', 'PSO170G1463' => 'pso', 'PSO339G0792' => 'pso', 'PSO384G2664' => 'pso', 'PSO384G4064' => 'pso', 'PSO478G1355' => 'pso', 'PSO528G0026' => 'pso', 'PSO585G0021' => 'pso', 'PSO782G2920' => 'pso', 'QL01p029011' => 'qlo', 'QL03p065115' => 'qlo', 'QL07p003102' => 'qlo', 'QL07p036245' => 'qlo', 'QL08p062463' => 'qlo', 'QL09p035226' => 'qlo', 'QL12p015925' => 'qlo', 'RcHm_v2.0_Chr1g0369201' => 'rch', 'RcHm_v2.0_Chr3g0464031' => 'rch', 'RcHm_v2.0_Chr3g0483441' => 'rch', 'RcHm_v2.0_Chr5g0067971' => 'rch', 'RcHm_v2.0_Chr6g0295661' => 'rch', 'RcHm_v2.0_Chr7g0200301' => 'rch', 'Rhsim04G0106000' => 'rsi', 'Rhsim05G0149400' => 'rsi', 'Rhsim06G0104400' => 'rsi', 'Rhsim07G0097600' => 'rsi', 'Rhsim07G0098700' => 'rsi', 'RhsimUnG0093100' => 'rsi', 'Sabra01G0087300' => 'sbr', 'Sabra02G0066000' => 'sbr', 'Sabra03G0082100' => 'sbr', 'Sabra05G0133800' => 'sbr', 'Sabra06G0032100' => 'sbr', 'Sabra08G0046700' => 'sbr', 'Sabra10G0149300' => 'sbr', 'SalBow3G2911' => 'sbo', 'SalBow5G4706' => 'sbo', 'SalBow6G0353' => 'sbo', 'SalBow6G1301' => 'sbo', 'SalBow6G6795' => 'sbo', 'SalBow6G7143' => 'sbo', 'SalBow7G4705' => 'sbo', 'Sc01g0001160' => 'sci', 'Sc01g0009020' => 'sci', 'Sc10g0002100' => 'sci', 'Sc11g0007380' => 'sci', 'Sc12g0001030' => 'sci', 'Sc19g0006650' => 'sci', 'Sed0003521' => 'sed', 'Sed0003658' => 'sed', 'Sed0014783' => 'sed', 'Sed0017685' => 'sed', 'Sed0019491' => 'sed', 'Sed0020197' => 'sed', 'Sed0020405' => 'sed', 'Sed0024953' => 'sed', 'Sed0025669' => 'sed', 'Sed0027033' => 'sed', 'SEGI_03116' => 'sgi', 'SEGI_03577' => 'sgi', 'SEGI_12475' => 'sgi', 'SEGI_29098' => 'sgi', 'SEGI_34860' => 'sgi', 'SGA_v2.0_scaffold105G30377' => 'sas', 'SGA_v2.0_scaffold196G40924' => 'sas', 'SGA_v2.0_scaffold221G42708' => 'sas', 'SGA_v2.0_scaffold25G11122' => 'sas', 'SGA_v2.0_scaffold28G12001' => 'sas', 'SGA_v2.0_scaffold2G01057' => 'sas', 'SGA_v2.0_scaffold52G18971' => 'sas', 'SGA_v2.0_scaffold69G23123' => 'sas', 'SMO147G0213' => 'smo', 'SMO174G0177' => 'smo', 'SMO351G0201' => 'smo', 'Solyc04g016280.3' => 'sly', 'Solyc05g052790.3' => 'sly', 'Solyc06g060370.3' => 'sly', 'Solyc08g079790.1' => 'sly', 'Solyc10g079280.2' => 'sly', 'Solyc10g079910.2' => 'sly', 'Solyc11g012880.2' => 'sly', 'Sopen04g008380' => 'spe', 'Sopen05g031300' => 'spe', 'Sopen06g020510' => 'spe', 'Sopen08g028150' => 'spe', 'Sopen10g029930' => 'spe', 'Sopen10g030530' => 'spe', 'Sopen11g007620' => 'spe', 'Sp1g11090' => 'spa', 'Sp1g19410' => 'spa', 'Sp3g08550' => 'spa', 'Sp3g09580' => 'spa', 'Sp5g32760' => 'spa', 'Sp6g37080' => 'spa', 'Sp6g38590' => 'spa', 'TAR369G0514' => 'tar', 'TAR374G1084' => 'tar', 'TAR375G0582' => 'tar', 'TAR376G0502' => 'tar', 'TAR381G0936' => 'tar', 'TAR623G1591' => 'tar', 'TAR628G0319' => 'tar', 'TAR633G0589' => 'tar', 'TAR636G0086' => 'tar', 'THA.LOC104800188' => 'tha', 'THA.LOC104809433' => 'tha', 'THA.LOC104813654' => 'tha', 'THA.LOC104816563' => 'tha', 'THA.LOC104816673' => 'tha', 'THA.LOC104817297' => 'tha', 'THA.LOC104818296' => 'tha', 'THA.LOC104823138' => 'tha', 'THA.LOC104823566' => 'tha', 'THA.LOC104826859' => 'tha', 'THA.LOC104826892' => 'tha', 'Thecc.03G265500' => 'tca', 'Thecc.05G023700' => 'tca', 'Thecc.05G151600' => 'tca', 'Thecc.08G124000' => 'tca', 'Thecc.09G308100' => 'tca', 'Thecc.10G027600' => 'tca', 'Thhalv10008006m.g' => 'esa', 'Thhalv10009473m.g' => 'esa', 'Thhalv10014173m.g' => 'esa', 'Thhalv10014183m.g' => 'esa', 'Thhalv10018828m.g' => 'esa', 'Thhalv10021139m.g' => 'esa', 'Thhalv10021195m.g' => 'esa', 'TPR.G14051' => 'tpr', 'TPR.G24054' => 'tpr', 'TPR.G25797' => 'tpr', 'TPR.G29799' => 'tpr', 'TPR.G30125' => 'tpr', 'TPR.G37679' => 'tpr', 'TPR.G6236' => 'tpr', 'TPR.G8043' => 'tpr', 'TPR.G8210' => 'tpr', 'TWI09G0662' => 'twi', 'TWI36G0716' => 'twi', 'TWI53G0098' => 'twi', 'TWI56G0190' => 'twi', 'TWI60G0324' => 'twi', 'TWI73G0657' => 'twi', 'TWI74G1372' => 'twi', 'TWI79G0278' => 'twi', 'unitig_0.g2165' => 'ugi', 'unitig_26.g9684' => 'ugi', 'unitig_37.g12708' => 'ugi', 'unitig_46.g18127' => 'ugi', 'unitig_46.g18440' => 'ugi', 'unitig_747.g21422' => 'ugi', 'vmacro00830' => 'vma', 'vmacro07003' => 'vma', 'vmacro09058' => 'vma', 'vmacro10069' => 'vma', 'vmacro12534' => 'vma', 'vmacro20228' => 'vma', 'VMungo0251G0546' => 'vmu', 'VMungo0331G1853' => 'vmu', 'VMungo0647G0653' => 'vmu', 'VMungo1309G0646' => 'vmu', 'VMungo1383G0549' => 'vmu', 'VMungo1383G1196' => 'vmu', 'Zm00001eb013120' => 'zma', 'Zm00001eb076560' => 'zma', 'Zm00001eb260190' => 'zma', 'Zm00001eb397150' => 'zma' ) $gf_id = 'HOM05D000671' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000671' ) $data_identifier = 'HOM05D000671' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 17, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 27, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 14, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 4, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 8, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb397150' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1